Brain-Trainer for BioEra Instruction Manual

Current version

Version 1.018 See changelog

Brain-Trainer for BioEra is a complete neurofeedback system that includes the powerful assessment of TQ and some of the most versatile and user-friendly training designs in the world. The whole structure of the program is made “by trainers for trainers”. With the Brain-Trainer software, you can use many different types of feedback: video files, games, MIDI music, brightness. And there’s much more coming soon as the software gets improved and updated.

Enroll in our free Brain-Trainer U course on Brain-Trainer for BioEra Software.

The Brain-Trainer software is intended for psychological training education and scientific research and should not be used as a medical technology.The Brain-Trainer software is still in development and being constantly improved. Some issues may arise as you use it and we expect to have all of them fixed in the next updates. If you have any problem with the Brain-Trainer software, please report it by sending an e-mail to

Download and Install Brain-Trainer software

The first step toward using your Brain-Trainer software is the software installation. This means you must have one or more software setup installer files on your computer that you will run. In order to run the setup file it must be saved on your computer.

The main setup file is the minimum required to run Brain-Trainer for BioEra software, but you may also have purchased additional modules for HEG/LIFE 2.0, Shadow or Games. If your purchase includes the full installation with all modules, you will have 4 setup installers in total.


Save downloads to your computer. The obvious location is your computer’s Downloads folder. You can then open the Downloads folder to find any files you have downloaded.

You can download from your Brain-Trainer account > Downloads if you made your purchase in the Brain-Trainer shop.

  • These will download as .zip files.

Open your Downloads folder and “unzip” (extract) the files.

  • Right-click on the file and select Extract all. You will see the files in the unzipped folder.

If you did not purchase from the Brain-Trainer shop, download your setup file(s) from the link provided to you. The file may not be in a zip format, so no extraction is necessary.

Once the file is saved to your computer and extracted if needed, it is ready to be run.


Before installing your software, check whether there is already a version on your computer. If have installed version 1.011 or older, please uninstall that version before proceeding.

If you are using version 1.012 or newer, you can now run the .exe installer(s). The process takes about 5 minutes. Double-click to install.

If there is a problem with the connection timing out before the installation process is complete, we suggest that you start the installer again, but select only one option at a time (e.g. designs). After that runs, select only the next option, etc. until all components are installed. In some cases, slow internet connection may require that the user go to a location with faster internet connection to complete the installation process.


Brain-Trainer auto-update icon Brain-Trainer for BioEra software will automatically update every 7 days. The Brain-Trainer icon at the bottom left opens the Updater to manually check for updates to the software. We recommend you not skip updates.

Updating without a device

Without a device connected, you will be unable to interact with the software interface to update the software version. If you don’t have your device with you, run bioera.exe from the program folder and change the device to Simulator to allow a version update.

Software Features

This is the main screen of the Brain-Trainer software:

The colored lamp in the top-right corner indicates which device is currently being used, as well as its status. A green light means the system is receiving data from the device. A red light means there’s no data being sent from the device and may indicate an issue with the device connection and/or setup.

If it’s the first time you run the Brain-Trainer software, the device is set to “Simulator”.

Protocol loaderProtocol loader allows you to load a pre-saved protocol for a specific client and even create all protocols for the Whole-Brain Training Plan to send as a folder for a client. See Saving protocols and Loading saved protocols.

In the right-bottom corner, there are three very useful buttons that can be used when something doesn’t work as expected.

The “panic button” refreshes all the elements in the screen and gets the design back to the working mode. It can be used anytime you make a change that is not automatically detected by the system.

The “reload button” closes and reopens the design. It can be useful if you have a frozen screen and the panic button doesn’t solve the issue. It should be used also when you make any changes in the device setup.

The “diagnostics button”creates a diagnostic file for troubleshooting the software. Open any design and click the top button in the right-bottom corner. Then send Brain-Trainer the file that is created in C:/Brain-Trainer for BioEra.

The gear icon at the bottom center opens the Device menu. Here you can set up your devices and select device settings. After changing to a new device, you must click the button “Click here to reload”.

Device Connection

  1. Connect your device to the computer.
  2. Open Brain-Trainer for BioEra.
  3. Click on the cog icon to open the Device menu.
  4. Select Device setup.
  5. Select J&J from the dropdown menu. Tip: Press the J key to find it quickly.
  6. Click Apply.
  7. Click the tab J&J settings.
  8. Under Device select for GP-8e (2 channels): GP8; for GP-12e (4 channels): C2++
  9. Click Apply and OK.
    Configuration will default to 2C EEG or 4C EEG linked. This can be used for most EEG training of 1 or more channels. If you do not see these configurations please contact us for an update.
  10. Now click the button “Click here to reload).

    1. Plug the Neurobit device in the USB port and turn it on.
    2. Click on the cog icon to open the Device menu.
    3. Select Device setup.
    4. Select Neurobit in the dropdown menu. Tip: Click to expand the dropdown menu and press the N key.
    5. Click Apply
    6. Open the third tab, Neurobit settings.
    7. Select your Neurobit device in the first dropdown list. In this example, the device is Neurobit Optima+ 4 USB, but yours might be another one.
    8. Click on the Open button.
    9. In the new window, load your settings.
    10. Click Load.
    11. If you are not already there, navigate to the C:/Brain-Trainer for BioEra/Neurobit Files folder. Select the appropriate file. If you are not sure of which file to choose, then select EEG 4C (L) Linked. When training, you will select settings appropriate to your protocol. HEG training uses HEG nIR, 2 channels with linked references uses 2C (L) Linked, etc. Refer to your training plan to know how many channels and whether references are linked or independent.
    12. Click Open.
    13. Click Close.
    14. Click OK and close the Device menu.
    15. The device name will switch to Neurobit with a green light. That means your device is correctly set. If it is not green, be sure your device is turned on. If you have changed from another device, press “Click here to reload”.
  1. Plug the PN Wiz device in the USB port.
  2. Click on the cog icon to open the Device menu.
  3. Select Device setup.
  4. Select PN Wiz in the dropdown menu. Tip: Click to expand the dropdown menu and press the P key five times.
  5. Click Apply.
  6. Open the second tab, Serial Port.
  7. Select the serial port in which your PN device is connected. In this example it’s COM3, but yours might be another one. Be careful with this selection as choosing the wrong port may make the program freeze.

If you do not know the COM port number assigned to your device when installing it, you can find it in the computer’s Device Manager.

  • Open the computer’s Device Manager (In the search field type “Device Manager” and select it).
  • Click arrow to expand Ports (COM & LPT) to see which port the Pocket Neurobics Wireless Dongle is using.

[Coming soon: what to do if you get a frozen window]

  1. Click OK. Tip: If the OK button doesn’t appear, try to resize the Device Selection window slightly.
  2. If you get an error message, click Close
  3. The device name will switch to PN Wiz, but with a red light
  4. Click on the Reload button. The design will close and reopen.
  5. You will probably get a green light. That means your device is correctly set.

NOTICE: Do not attach the Alpha200 amplifier to your computer until AFTER you have completed the software installation process.

  1. Download the file AlphaAmp_W7_64.exe
  2. Run the installer.
  3. Now you may connect the Alpha200 to your computer.
  4. Open the computer’s Device Manager (In the search field type “Device Manager” and select it).
  5. Click arrow to expand Universal Serial Bus controllers to locate the unknown USB.
  6. Right-click and select Update.
  7. For a second time, right-click and select Update.
  8. Open Brain-Trainer for BioEra.
  9. Click on the cog icon to open the Device menu.
  10. Select Device setup.
  11. Select Alpha200 in the dropdown menu. Tip: Press the A key to find it quickly.
  12. Click Apply.
  13. Click OK.
  14. The device name will switch to Alpha200.
  15. Click on the button “Click here to reload”. The design will close and reopen.

  1. Connect the Bluetooth in a USB port and turn on the Ganglion power.
  2. Click on the cog icon to open the Device menu.
  3. Select Device setup.
  4. Select Ganglion in the dropdown menu. Tip: Click to expand the dropdown menu and press the G key.
  5. Click Apply
  6. Open the second tab, Serial Port.
  7. Select the serial port for your device in the first dropdown list.

If you do not know the COM port number assigned to your device when installing it, you can find it in the computer’s Device Manager.

  • Open the computer’s Device Manager (In the search field type “Device Manager” and select it).
  • Click arrow to expand Ports (COM & LPT) to see which port the Bluetooth is using.
  1. Click Apply.
  2. Click the 3rd tab, Ganglion settings to confirm that Mode is set to EEG, EMG or ECG.
  3. Click OK and close the Device menu.
  4. Click the button “Click here to reload”. When you select a design, the device name will switch to Ganglion and the light should be green. If it is not, be sure you have your device powered on.

Design Options

TQ – TQ Trainer’s Q assessment

Gather data for creating a Whole-Brain Training Plan. Select 2 channels or 4 channels according to your amplifier.

TQ 4C no-artifacts

“No-artifacts (tests version)” is under development. Its purpose is to collect data while excluding data with artifact. We recommend this for testing only as its correlation with the TQ7 artifacting has not been confirmed.

HEG – Hemoencephalography

Increases blood perfusion to the prefrontal area of the brain for attention, impulse control, mood stability. Trains both “closed focus” (increase training) and “open focus” (decrease training).

General HEG:

Select up (increase), down (decrease), both or free mode (either as desired).

LIFE Game for HEG

Beautiful graphics in game format to display the brain’s activity as it trains in both directions for closed focus and open focus.

FRE – Frequency

Trains frequencies up or down as well as relationship between frequency bands.
fre design options


1 channel, 2 channels summed, 4 channels summed. Signals are summed before going forward to filters, thresholds, etc. For your convenience, a button is available for 2-channel summed (Centering) settings under Design setup.


2 channels with individual signals (not summed). Preset protocols are available on this design for Beta/SMR, Dual Bipolar and Dual Bipolar (Calming) under Design setup.


4 channels with individual signals (not summed). For your convenience, a button is available for RH Bipolar protocol settings to auto-load.


Used for percentage / ratio training, typically SMR%. Use sliders to select frequencies between 0.1 and 20 Hz. Use sliders control arrows to increase or decrease by 0.1 Hz.
FRE% frequency selector

CON – Connectivity

connectivity design options

Multiband Coherence

Train multiple bands up or down simultaneously. High frequency coherence is trained down; low frequency coherence is trained up. Reverse (Rocking) button allows training the opposite direction. A collection of multi-voice songs is available. Each voice is enabled according to a target being met.
design setup mbc


Trains synchrony in 1, 2 or 3 bands simultaneously in 2 channels.

Multivariate Coherence (test version)

Special protocol for frequency + coherence training based on Rob Coben’s Four Channel Multivariate Coherence Training: Development and Evidence in Support of a New Form of Neurofeedback.

BAL – Balance

Trains relationships of frequencies between areas of the brain or between frequency bands in different sites.

Alpha-Beta Asymmetry

Balances alpha and beta between left and right or front and back site pairs. Select alpha and beta, alpha only or beta only in Design setup.


Decreases the difference between two bands in 1, 2 or 4 channels.

Sum & Diff

Decreases both the sum of two bands and the difference of two bands between different sites.

ALP – Alpha

Trains middle frequencies of 8-13 Hz.
alpha design options

Alpha Up

Increases percentage of alpha over entire EEG, 10 Hz alpha over entire alpha band and decreases non-alpha frequencies. Select range for dominant frequency: 8-12 Hz (default) or 6-12 Hz.


Deep states / Peak performance protocol.

Design Features

Design settings

Activate channels, select frequency bands and feedback type, select special protocol settings, set session timer. Any variables set in a design will be present the next time the design is loaded, including feedback type and client selected.

Client folder

A client folder can be created from the design by using the “Add client” icon. Session recordings such as Assessment files are saved to this folder.

Saving protocols

You can select settings for a client according to his/her training plan and save the protocol to the client’s folder. This allows you to save an entire set of protocols for the Whole-Brain Training Plan that can be sent to a client for training. Specific blocks can be indicated.

Loading saved protocols

The “Load protocol” folder icon in the top right of the design will allow you to select protocols with their settings that you have saved. Select client, block and protocol.


Advanced users only:  Threshold properties can be changed when the design is not running. The following settings may be edited:

  • Success rate for auto targets
  • Epoch length
  • Display range

Session Timer

The session can be stopped at any time during training using the stop button. Alternatively, the session time can be set using the session timer. Click the session timer icon and a slider will be visible. Click and drag the slider to set the number of minutes the session should last. A chime will sound when the session ends.

Device Settings

Settings for your amplifier can be accessed by clicking on the amplifier name.

Signal Tester

Signal quality can be checked using the Signal Tester. Open the Signal Tester window by clicking the brain wave icon. The Signal Tester window can be sized larger by clicking and dragging the corner of the window.

MIDI Tones Control

The MIDI sounds can be muted if desired by clicking the speaker icon.

Feedback Options

Training can be done with the default MIDI (sound) tones or you can select enhanced feedback from our available options.

Click – contingent audio feedback

Brain-Trainer designs generally have default “click” sound feedback that can will be on in addition to visual feedback. The click sound can be heard when the training targets are all met for 1 second.

MIDI continuous audio feedback

Brain-Trainer designs generally have default “MIDI” sound feedback that can be used alone or in addition to visual feedback.

HEG options and Shadow feedback

HEG general training can use feedback based on the signal going in the correct direction, the signal going above the threshold target (or below in diving) or based on the Attention Index (keeping the signal at or above the previous signal sample).

Shadow feedback

A shadow window overlays any screen or window that you choose. It can be resized lik any window by clicking the corner with your mouse and dragging it until it is the size or shape that you want.

NOTE: Start the data stream before starting the shadow.

  1. Select design settings
  2. Select shadow settings
  3. Start the session
  4. Start the shadow
  5. Fix shadow to start feedback

Video player feedback

Use a video playlist as stop/go or bright/dim feedback.
NOTE: Make changes to the video playlist before starting the data stream.
Select Simple Video Player if the standard player does not work properly.

  1. Open the Video panel..
  2. Load videos to playlist and select settings options.
  3. Close video panel.
  4. Start session. (Play).

Games Feedback

The games panel has a selection of 8 games plus the option to load your own flash game that is compatible with Brain-Trainer such as other BioPLAY games that are not included with Brain-Trainer software. Required inputs for such games are:

  • Input 1: On/Off (boolean)
  • Input 2: On/Off (boolean)
  • Input 3: Variable (percentage)

Running BioEra Pro

A full version of BioEra Pro is installed with your Brain-Trainer software. Most trainers will use only the Brain-Trainer interface and designs. For advanced trainers with knowledge of programming designs themselves, BioEra Pro can be run on its own. To run BioEra Pro, open C:\Brain-Trainer for BioEra. Find the file bioera.exe (application) and double-click. Bioera.exe gives access to the full function of BioEra. You may see a window asking for a password. Click cancel. Then a message is shown that it is in “run only” mode. This only refers to the specific design. It is possible to create a new design or load a design from the computer.


Device selection

Ganglion- when selected but not connected, Device setup is not available

– Go to the folder C:/Brain-Trainer for BioEra
– Run bioera.exe
– It will open Brain-Trainer for BioEra along with the programming window (signal diagram)
– In this window, go to Tools –> Device selection and configuration. Then you will be able to select another device.


When selecting HEG device in design program crashes

HEG module may not be installed properly. Install HEG module from C:\Brain-Trainer\ins

HEG design not working properly

HEG module may not be installed properly. Install HEG module from C:\Brain-Trainer\ins

HEG design screen flashing

The flashing is opening and closing. HEG module may not be installed properly. Install HEG module from C:\Brain-Trainer\ins


If the updater is not working as expected, it can be run manually. Close Brain-Trainer for BioEra. Open the folder C:\Brain-Trainer for BioEra\bt_updater and run the file “bt_updater.”


If you have issues playing videos, we recommend downloading and installing K-Lite Codec Pack. Basic is fine. “Server 1” is usually enough. This should allow you to play any video format in Brain-Trainer software.

Video player grey with no video displayed

If K-Lite is installed and you still see no video displayed in the video window using Simple Video Player, try this workaround:

  1. Open simple video player.
  2. Edit play list.
  3. Click “Reload” button at bottom right of design.
  4. Now start session.

General issues or bugs

Open Brain-Trainer through C:\Brain-Trainer for BioEra\start_debugger.bat. Perform the steps that created the issue and copy the text in the console window. Send to bt4be for analysis.

This manual is under construction. If you have any issues, send an e-mail to bt4be
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